Shao-Lun (Allen) LiuPersonal data of - 東海大學生命科學系

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Name	Shao-Lun (Allen) Liu
Category	Full-time Teacher
Job title	Associate Professor
Telephone number	+886-4-23590121 ext. 32414 (Office) & 32415 (Lab)
Fax	+886-4-23590296
Contact address	NO. 181, SECTION 3, TAICHUNG PORT ROAD, TAICHUNG CITY 40704, TAIWAN, R.O.C.
E-mail
E-mail(2)
Personal website	http://algae.thu.edu.tw/lab
Highest Diploma	University of British Columbia, Ph.D.

Discipline	General Biology (Bacteria, Protists, Plants and Fungi), Plant Physiology, Biology of Algae, Molecular and Genome Evolution, Evolution, Bioinformatics
Research expertise	Molecular and Genome Evolution, Molecular Systematics, Molecular Ecology
Forum	Forum link
Laboratory	Plant Genome and Molecular Evolution Lab /

Educational background summary
School name	Country	Department	Degree	Starting date
University of British Columbia	Canada	Botany	Ph.D.	2007-01 ~ 2011-06
National Changhua University of Education	Taiwan	Biology	MS.	2002-09 ~ 2004-06
National Changhua University of Education	Taiwan	Biology	BS.	1998-09 ~ 2002-06

Experiences
Service organization/unit	Job title	Department	Responsbilities	Starting date
University of British Columbia	Postdoctoral Fellow	Botany	Postdoctoral Fellow	2011-07 ~ 2011-12

Journal paper summary
Entry Year	Publication	Author
107	2018,,54,pp25-33 (SCI)	Shao-Lun (Allen) Liu
107	2018,,144,pp20-30 (SCI)	Shao-Lun (Allen) Liu
106	2017,,48,pp700-705 (非SCI)	Shao-Lun (Allen) Liu
106	2017,,174,pp1192-1204 (SCI)	Shao-Lun (Allen) Liu
105	2016,,94,pp463-472 (SCI)	Shao-Lun (Allen) Liu
104	Hsieh CJ, Zhan SH, Lin YC, Tang SL, Liu SL*,2015,Analysis of rbcL sequences reveals the global biodiversity, community sturcture, and biogeographical pattern of thermoacidophilic red algae (Cyanidiales),Journal of Phycology,In press (SCI)	Shao-Lun (Allen) Liu
104	Liu SL*, Lin SM, and Chen PC,2015,Phylogeny, species diversity and biogeographic patterns of the genus Tricleocarpa (Galaxauraceae, Rhodophyta) from the Indo-Pacific region, including T. confertus sp. nov. from Taiwan,European Journal of Phycology,50,pp439-456 (SCI)	Shao-Lun (Allen) Liu
104	Hoffman R, Liu SL, Sternberg M, and Lipkin Y,2015,First record of the calcified genus Dichotomaria Lamarck (Nemaliales, Rhodophyta) in the Mediterranean Sea.,Mediterranean Marine Science,16,pp325-330 (SCI)	Shao-Lun (Allen) Liu
104	Lin SM*, Rodríguez-Prieto C, Huisman JM, Guiry MD, Payri C, Nelson WA, and Liu SL. ,2015,A phylogenetic re-appraisal of the family Liagoraceae sensu lato (Nemaliales, Rhodophyta) based on sequence analyses of two plastid genes and post-fertilization development,Journal of Phycology,51,pp546-559 (SCI)	Shao-Lun (Allen) Liu
104	Chou JY, Liu SL, Wen YD, Wang WL*,2015,Phylogenetic analysis of Bangiadulcis atropurpurea (A. Roth) W. A. Nelson and Bangia fuscopurpurea (Dillwyn) Lyngbye (Bangiales, Rhodophyta) in Taiwan,Archives of Biological Science,67,pp445-454 (SCI)	Shao-Lun (Allen) Liu
103	2014,Protein subcellular relocalization after gene and genome duplication in Arabidopsis,Genome Biology and Evolution,6,pp2501-2515 (SCI)	Shao-Lun (Allen) Liu
102	2014,Frequent changes in expression profile and accelerated sequence evolution of duplicated imprinted genes in Arabidopsis,Genome Biology and Evolution,6,pp1830-1842 (SCI)	Shao-Lun (Allen) Liu
102	Wang WL, Lin CS, Lee WJ & Liu SL,2013,Morphological and molecular characteristics of Homoeostrichus formosana sp. nov. (Dictyotaceae, Phaeophyceae) from Taiwan,Botanical Studies,54,pp13- (SCI)	Shao-Lun (Allen) Liu
101	Pan G, Xu J, Li T, Xia Q, Liu SL, Zhang G, Li S, Li C, Liu H, Yang L, Liu T, Zhang X , Wu Z, Fan W, Dang X, Xiang H, Tao M, Li Y, Hu J, Li Z, Lin L , Luo J, Geng L, Wang LL, Long M, Wan Y, He N, Zhang Z , Lu C, Keeling PJ, Wang J, Xiang Z, Zhou Z,2013,Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation,BMC Genomics,14,pp186- (SCI)	Shao-Lun (Allen) Liu
101	Janouskovec J, Liu SL, Martone PT, Carré W, Leblanc C, Collén J & Keeling PJ,2013,Evolution of red algal plastid genomes: ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers,PLoS One ,8,ppe59001-e59001 (SCI)	Shao-Lun (Allen) Liu
101	Liu SL, Lin SM & Wang WL,2013,Molecular phylogeny of the genus Dichotomaria (Galaxauraceae, Rhodophyta) from the Indo-Pacific region, including the new species D. hommersandii from South Africa,European Journal of Phycology,48,pp221-234 (SCI)	Shao-Lun (Allen) Liu
101	Liu SL, Liao LM, & Wang WL,2013,Conspecificity of two morphologically distinct calcified red algae from the northwest Pacific Ocean: Galaxaura pacifica and G. filamentosa (Galaxauraceae, Rhodophyta),Botanical Studies,54,pp1-19 (SCI)	Shao-Lun (Allen) Liu
100	Liu SL, Baute GJ, & Adams KL,2011,Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana,Genome Biology and Evolution,3,pp1419-1436 (SCI)	Shao-Lun (Allen) Liu
99	Liu SL & Adams KL,2010,Dramatic change in function and expression pattern of a gene duplicated by polyploidy created a paternal effect gene in the Brassicaceae,Molecular Biology and Evolution,27,pp2817-2828 (SCI)	Shao-Lun (Allen) Liu
98	Liu SL & Wang WL,2009,Molecular systematics of the genus Actinotrichia (Galaxauraceae, Rhodophyta) from Taiwan, with a description of Actinotrichia taiwanica sp. nov.,European Journal of Phycology,44,pp89-105 (SCI)	Shao-Lun (Allen) Liu
98	Liu SL, Zhuang Y, Zhang P, & Adams KL,2009,Comparative analysis of structural diversity and sequence evolution in plant mitochondrial genes transferred to the nucleus,Molecular Biology and Evolution,26,pp875-891 (SCI)	Shao-Lun (Allen) Liu
97	Liu SL & Adams KL,2008,Molecular adaptation and expression evolution following duplication of genes for organellar ribosomal protein S13 in rosids,BMC Evolutionary Biology,8,pp25- (SCI)	Shao-Lun (Allen) Liu
95	Liao CC, Liu SL, & Wang WL,2006,Effects of temperature and pH on the growth and photosynthesis of thermophilic cyanobacteria Synechoccocus lividus measured by pulse amplitude modulated fluorometer,Phycological Research,54,pp260-268 (SCI)	Shao-Lun (Allen) Liu
94	Wang WL, Liu SL, & Lin SM,2005,First description of carposporophyte development in Scinaia chinensis (Galaxauraceae, Rhodophyta), a species newly recorded for Taiwan,Cryptogamie, Algologie,26,pp155-164 (SCI)	Shao-Lun (Allen) Liu
94	Wang WL, Liu SL, & Chen PC,2005,Studies on the morphotype alternation in Monoraphidium sp. (Selenastraceae, Chlorophyta),Cryptogamie, Algologie,26,pp243-257 (SCI)	Shao-Lun (Allen) Liu
94	Wang, WL, Liu SL, & Lin SM,2005,Systematics of the calcified genera of Galaxauraceae (Nemaliales, Rhodophyta) with an emphasis on Taiwan species,Journal of Phycology,41,pp685-703 (SCI)	Shao-Lun (Allen) Liu
94	Liu SL, Wang, WL, Dy DT, & Fang CC.,2005,The effect of ulvoid macroalgae on the inorganic carbon utilization by an intertidal seagrass Thalassia hemprichii,Botanical Bulletin of Academia Sinica (Botanical Studies),46,pp197-203 (SCI)	Shao-Lun (Allen) Liu
93	Liu SL & Wang WL,2004,Two new members of freshwater red algae in Taiwan: Compsopogon tenellus Ling et Xie and C. chalybeus Kützing (Compsopogonaceae, Rhodophyta),Taiwania,49,pp32-38 (非SCI)	Shao-Lun (Allen) Liu
93	Liu SL, Wang WL, & Liao LM,2004,Batrachospermum hirosei Ratnabapathy et Kumano, a freshwater red alga new to the Philippines,49,pp141-147 (非SCI)	Shao-Lun (Allen) Liu
93	Liu SL, Wang LC, & Wang WL,2004,Inorganic carbon utilization of the freshwater red alga Compsopogon coeruleus (Balbis) Montagne (Compsopogonaceae, Rhodophyta) evaluated by in situ measurement of chlorophyll fluorescence,Taiwania,49,pp207-217 (非SCI)	Shao-Lun (Allen) Liu

國科會計畫Overview/Summary
Year	Project name	Participant	Assignment	Project period	Subsidized / Entrusted organization	Attached file/Reference link
104		Shao-Lun (Allen) Liu		2015-05 ~ 2016-04		/
103		Shao-Lun (Allen) Liu		2014-08 ~ 2015-07		/
102		Shao-Lun (Allen) Liu		2013-08 ~ 2014-07		/
101	Effects of radioactive minerals and heavy metals on the biodiversity, transcriptome, and the number of duplicated genes of hot spring red algae in Taiwan	Shao-Lun (Allen) Liu	Primary Investigator	2012-08 ~ 2013-07	National Science Council	/

其他計畫Overview/Summary
Year	Project name	Participant	Assignment	Project period	Subsidized / Entrusted organization	Attached file/Reference link
103		Shao-Lun (Allen) Liu		2014-01 ~ 2016-12		/

Seminar paper summary
Entry Year	Conference period	Publication	Author
100	2011/01/00 2011/01/00	Liu SL, Greg B, & Adams KL,2011,Reciprocal, organ and cell type-specific expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana,Plant and Animal Genome XIX Conference,San Diego, USA,2011/01/00	Shao-Lun (Allen) Liu
99	2010/04/00 2010/04/00	Liu SL & Adams KL,2010,Unexpected changes in function and expression pattern of a gene duplicated by polyploidy created a paternal effect gene in the Brassicaceae,EVO-WIBO 2010,Port Townsend, Washington, USA,2010/04/00	Shao-Lun (Allen) Liu
99	2010/01/00 2010/01/00	Liu SL & Adams KL,2010,Induction of regulatory subfunctionalization and neofunctionalization between duplicated genes in Arabidopsis thaliana in response to abiotic stresses,Plant and Animal Genome XVIII Conference,San Diego, USA,2010/01/00	Shao-Lun (Allen) Liu
98	2009/08/00 2009/08/00	Liu SL,2009,Multi-gene analyses of red algal plastid DNA show unexpected acceleration of synonymous nucleotide substitutions,9th International Phycological Congress,Tokyo, Japan,2009/08/00	Shao-Lun (Allen) Liu
98	2009/06/00 2009/06/00	Liu SL & Adams, KL,2009,Reciprocal, organ-specific, expression between duplicated genes arises more from neofunctionalization than subfunctionalization in Arabidopsis,Society for Molecular Biology and Evolution 2009 Annual Meeting,Iowa, USA,2009/06/00	Shao-Lun (Allen) Liu
98	2009/01/00 2009/01/00	Liu SL, Zhuang Y, Zhang P, & Adams KL,2009,Comparative analysis of structural diversity and sequence evolution in plant mitochondrial genes transferred to the nucleus,Plant and Animal Genome XVII Conference,San Diego, USA,2009/01/00	Shao-Lun (Allen) Liu
97	2008/07/00 2008/07/00	Liu SL & Adams KL,2008,Subfunctionalization of duplicated genes during the evolution of the Arabidopsis lineage,Botany 2008 Conference,Vancouver, Canada,2008/07/00	Shao-Lun (Allen) Liu
97	2008/05/00 2008/05/00	Liu SL & Adams KL,2008,Molecular evolution and expression evolution following duplication of organellar ribosomal protein S13 genes,CSEE 2008 SCEE,Vancouver, Canada,2008/05/00	Shao-Lun (Allen) Liu
96	2007/08/00 2007/08/00	Liu SL & Adams KL,2007,Co-expression of two genes for mitochondrial ribosomal protein S13: a duplicated, neofunctionalized nuclear gene and a mitochondrial gene,Canadian Plant Genomic Workshop,Vancouver, Canada,2007/08/00	Shao-Lun (Allen) Liu
96	2007/04/00 2007/04/00	Liu SL, Dy DT & Wang WL,2007,Photosynthetic performance determines the abundance of four intertidal seagrass species in Central Philippines,2007 Fisheries and Marine Ecosystems Graduate Student Conference,Gibson, British Columbia, Canada,2007/04/00	Shao-Lun (Allen) Liu
92	2003/12/00 2003/12/00	Liu SL, Wang WL & Lin SM,2003,A red alga, Scinaia chinensis (Tseng) comb. nov. (Galaxauraceae, Rhodophyta), new to Taiwan,2003 R.O.C. Taiwan Algae Society Symposium,Taipei, Taiwan,2003/12/00	Shao-Lun (Allen) Liu
91	2002/11/00 2002/11/00	Liu SL & Wang WL,2002,Phenotypic plasticity and morphotype alternation in Monoraphidium pusillum (Oocystaceae, Chlorophyta) as affected by environmental factors,University of San Carlos, Cebu, Philippines,2002/11/00	Shao-Lun (Allen) Liu

Writing

Book Chapters
1. Barker MS, Baute GJ, Liu SL. 2012. Duplication and Turnover in Plant Genomes. In Wendel JF (Ed.). Plant Genome Diversity (Vol 1: Molecular Biology and Evolution), New York, NY, Springer

Title	Date	Attached file
Evolution of Duplicate Gene Sequences, Expression Patterns, and Functions in the Brassicaceae and Other Rosids	2011-06	博士論文 (Ph.D. Dissertation)
The phylogenetic relationships of the calcified genera of Galaxauraceae (Nemaliales, Rhodophyta) from Taiwan based on rbcL sequence and morphological evidence	2004-06	碩士論文 (Master Thesis)

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